Missing Agent code in Designer

I have an application that uses agents. However, when I went into Designer to edit one of them, all of the agents were empty - there was no code in any of them. I have a template that contains the code, but when I apply the template, the code does not appear to be copied over, but the agents still seem to work. Has anyone elase seen this? Any solutions?

Subject: Missing Agent code in Designer

Are those Lotus Script Agents?

If so, have you looked at the Initialize Sub?