Notes.ini variables having no effect

I have been trying to set up a silent install/configure but some variables in the notes.ini file seem to have no effect, namely MailFile and MailServer, notes just overwrites them with what was set in the location preferences. We are using hosted organisation so MailServer can’t be set when configuring notes at start up or with ConfigFile variable (well not that I know of).

Some help would be greatly appreciated.

Cheers,

Rowan